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d4c5cf4670 add a few more nodes
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2026-05-18 20:55:46 -07:00
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"""Arc Revolve — subtract a cylindrical arc background."""
from __future__ import annotations
import numpy as np
from backend.node_registry import register_node
from backend.data_types import DataField
def _arc_kernel(radius: int) -> np.ndarray:
"""Build a 1D arc kernel: z = 1 - sqrt(1 - (i/radius)^2)."""
half = min(radius, 4096)
i = np.arange(-half, half + 1, dtype=np.float64)
t = np.clip((i / radius) ** 2, 0.0, 1.0)
return 1.0 - np.sqrt(1.0 - t)
def _arc_revolve_1d(data: np.ndarray, radius: int) -> np.ndarray:
"""Compute arc-revolve background for each row independently."""
yres, xres = data.shape
kernel = _arc_kernel(radius)
half = len(kernel) // 2
bg = np.empty_like(data)
for row in range(yres):
line = data[row].copy()
# Suppress deep outliers before fitting
window = min(half, xres // 2)
if window > 0:
from scipy.ndimage import uniform_filter1d
local_mean = uniform_filter1d(line, size=2 * window + 1, mode='nearest')
local_sq = uniform_filter1d(line ** 2, size=2 * window + 1, mode='nearest')
local_rms = np.sqrt(np.maximum(local_sq - local_mean ** 2, 0.0))
threshold = local_mean - 2.5 * np.maximum(local_rms, 1e-30)
line = np.maximum(line, threshold)
# For each pixel, find the lowest position the arc can sit
padded = np.pad(line, half, mode='edge')
row_bg = np.full(xres, np.inf)
for k in range(len(kernel)):
shifted = padded[k:k + xres] - kernel[k]
row_bg = np.minimum(row_bg, shifted)
bg[row] = row_bg
return bg
@register_node(display_name="Arc Revolve")
class ArcRevolve:
@classmethod
def INPUT_TYPES(cls):
return {
"required": {
"field": ("DATA_FIELD",),
"radius": ("INT", {"default": 20, "min": 1, "max": 1000, "step": 1}),
"direction": (["horizontal", "vertical", "both"], {"default": "horizontal"}),
}
}
OUTPUTS = (
('DATA_FIELD', 'leveled'),
('DATA_FIELD', 'background'),
)
FUNCTION = "process"
DESCRIPTION = (
"Subtract a cylindrical arc background. A circular arc of the given "
"radius is rolled under each row (or column), and the envelope it "
"traces out is subtracted as the background."
)
KEYWORDS = ("arc", "revolve", "cylindrical", "background", "level")
def process(self, field: DataField, radius: int = 20,
direction: str = "horizontal") -> tuple:
data = np.asarray(field.data, dtype=np.float64)
if direction == "horizontal":
bg = _arc_revolve_1d(data, radius)
elif direction == "vertical":
bg = _arc_revolve_1d(data.T, radius).T
else:
bg_h = _arc_revolve_1d(data, radius)
bg_v = _arc_revolve_1d(data.T, radius).T
bg = np.minimum(bg_h, bg_v)
return (field.replace(data=data - bg), field.replace(data=bg))

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"""Level Rotate — level by physically rotating the data plane."""
from __future__ import annotations
import numpy as np
from scipy.ndimage import map_coordinates
from backend.node_registry import register_node
from backend.data_types import DataField
@register_node(display_name="Level Rotate")
class LevelRotate:
@classmethod
def INPUT_TYPES(cls):
return {
"required": {
"field": ("DATA_FIELD",),
}
}
OUTPUTS = (
('DATA_FIELD', 'leveled'),
)
FUNCTION = "process"
DESCRIPTION = (
"Level by physically rotating the data plane. Fits a best-fit plane, "
"converts its slopes to tilt angles, then rotates the surface by "
"those angles using interpolation rather than algebraic subtraction."
)
KEYWORDS = ("rotate", "tilt", "level", "plane")
def process(self, field: DataField) -> tuple:
data = np.asarray(field.data, dtype=np.float64)
yres, xres = data.shape
# Fit plane: z = a + bx*x + by*y (x,y in pixel coords)
yy, xx = np.mgrid[:yres, :xres].astype(np.float64)
A = np.column_stack([np.ones(yres * xres), xx.ravel(), yy.ravel()])
coeffs, _, _, _ = np.linalg.lstsq(A, data.ravel(), rcond=None)
_, bx, by = coeffs
# Convert pixel slopes to tilt angles
alpha_x = np.arctan(bx)
alpha_y = np.arctan(by)
# Build rotation: for each output pixel, find where it came from
cx = (xres - 1) / 2.0
cy = (yres - 1) / 2.0
cos_x = np.cos(alpha_x)
cos_y = np.cos(alpha_y)
# Source coordinates after removing tilt
src_x = xx.copy()
src_y = yy.copy()
src_z = data.copy()
# Rotate about x-axis (corrects y-tilt)
dy = yy - cy
src_y_rot = cy + dy * cos_y
src_z = src_z - dy * np.sin(alpha_y)
# Rotate about y-axis (corrects x-tilt)
dx = xx - cx
src_x_rot = cx + dx * cos_x
src_z = src_z - dx * np.sin(alpha_x)
# Resample with the adjusted z values
result = map_coordinates(src_z, [src_y_rot, src_x_rot], order=1,
mode='nearest')
return (field.replace(data=result),)

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"""Sphere Revolve — subtract a spherical cap background."""
from __future__ import annotations
import numpy as np
from scipy.ndimage import uniform_filter
from backend.node_registry import register_node
from backend.data_types import DataField
def _sphere_kernel(radius: int) -> np.ndarray:
"""Build a 2D spherical cap kernel."""
half = min(radius, 512)
i = np.arange(-half, half + 1, dtype=np.float64)
ii, jj = np.meshgrid(i, i)
r2 = (ii ** 2 + jj ** 2) / (radius ** 2)
r2 = np.clip(r2, 0.0, 1.0)
return 1.0 - np.sqrt(1.0 - r2)
@register_node(display_name="Sphere Revolve")
class SphereRevolve:
@classmethod
def INPUT_TYPES(cls):
return {
"required": {
"field": ("DATA_FIELD",),
"radius": ("INT", {"default": 20, "min": 1, "max": 500, "step": 1}),
}
}
OUTPUTS = (
('DATA_FIELD', 'leveled'),
('DATA_FIELD', 'background'),
)
FUNCTION = "process"
DESCRIPTION = (
"Subtract a spherical cap background. A sphere of the given radius "
"is rolled under the surface, and the envelope it traces is "
"subtracted as the background."
)
KEYWORDS = ("sphere", "revolve", "spherical", "background", "level")
def process(self, field: DataField, radius: int = 20) -> tuple:
data = np.asarray(field.data, dtype=np.float64)
yres, xres = data.shape
kernel = _sphere_kernel(radius)
half = kernel.shape[0] // 2
# Suppress deep outliers
window = max(1, half // 2)
local_mean = uniform_filter(data, size=2 * window + 1, mode='nearest')
local_sq = uniform_filter(data ** 2, size=2 * window + 1, mode='nearest')
local_rms = np.sqrt(np.maximum(local_sq - local_mean ** 2, 0.0))
threshold = local_mean - 2.5 * np.maximum(local_rms, 1e-30)
clipped = np.maximum(data, threshold)
padded = np.pad(clipped, half, mode='edge')
bg = np.full_like(data, np.inf)
ks = kernel.shape[0]
for di in range(ks):
for dj in range(ks):
k_val = kernel[di, dj]
if k_val >= 1.0:
continue
shifted = padded[di:di + yres, dj:dj + xres] - k_val
bg = np.minimum(bg, shifted)
return (field.replace(data=data - bg), field.replace(data=bg))

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"""Unrotate — auto-detect and correct in-plane scan rotation."""
from __future__ import annotations
import numpy as np
from scipy.ndimage import rotate as ndimage_rotate
from backend.node_registry import register_node
from backend.data_types import DataField
def _slope_angle_histogram(data: np.ndarray, n_bins: int = 3600) -> np.ndarray:
"""Compute histogram of local slope angles over [0, 2*pi)."""
dy = np.diff(data, axis=0)[:, :-1]
dx = np.diff(data, axis=1)[:-1, :]
angles = np.arctan2(dy, dx) % (2 * np.pi)
hist, _ = np.histogram(angles.ravel(), bins=n_bins, range=(0, 2 * np.pi))
return hist.astype(np.float64)
def _find_dominant_angle(hist: np.ndarray, symmetry: int) -> float:
"""Find the rotation correction angle for a given symmetry order.
Folds the histogram into one symmetry sector, finds the peak, and
returns the offset to the nearest axis.
"""
n_bins = len(hist)
sector = n_bins // symmetry
folded = np.zeros(sector, dtype=np.float64)
for k in range(symmetry):
start = k * sector
end = start + sector
if end <= n_bins:
folded += hist[start:end]
peak_bin = int(np.argmax(folded))
bin_angle = (2 * np.pi / symmetry) / sector
# The angle of the peak
peak_angle = peak_bin * bin_angle
# The nearest axis is at multiples of pi/symmetry
axis_spacing = np.pi / symmetry
nearest_axis = round(peak_angle / axis_spacing) * axis_spacing
correction = nearest_axis - peak_angle
return float(correction)
@register_node(display_name="Unrotate")
class Unrotate:
@classmethod
def INPUT_TYPES(cls):
return {
"required": {
"field": ("DATA_FIELD",),
"symmetry": (["2-fold", "3-fold", "4-fold", "6-fold"], {"default": "4-fold"}),
}
}
OUTPUTS = (
('DATA_FIELD', 'leveled'),
)
FUNCTION = "process"
DESCRIPTION = (
"Auto-detect and correct in-plane scan rotation. Computes a slope "
"angle histogram, finds the dominant feature direction for the given "
"symmetry, and rotates the image to align features with the axes."
)
KEYWORDS = ("rotation", "alignment", "angle", "symmetry", "crystal")
def process(self, field: DataField, symmetry: str = "4-fold") -> tuple:
data = np.asarray(field.data, dtype=np.float64)
sym_order = int(symmetry[0])
hist = _slope_angle_histogram(data)
angle_rad = _find_dominant_angle(hist, sym_order)
angle_deg = float(np.degrees(angle_rad))
if abs(angle_deg) < 0.01:
return (field,)
rotated = ndimage_rotate(data, angle_deg, reshape=False, order=1,
mode='nearest')
return (field.replace(data=rotated),)

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"""Zero Value — shift data so the mean or maximum equals zero."""
from __future__ import annotations
import numpy as np
from backend.node_registry import register_node
from backend.data_types import DataField
@register_node(display_name="Zero Mean")
class ZeroMean:
@classmethod
def INPUT_TYPES(cls):
return {
"required": {
"field": ("DATA_FIELD",),
}
}
OUTPUTS = (
('DATA_FIELD', 'leveled'),
)
FUNCTION = "process"
DESCRIPTION = "Shift all values so the mean is exactly zero."
KEYWORDS = ("offset", "center", "level", "mean")
def process(self, field: DataField) -> tuple:
data = np.asarray(field.data, dtype=np.float64)
return (field.replace(data=data - data.mean()),)
@register_node(display_name="Zero Maximum")
class ZeroMaximum:
@classmethod
def INPUT_TYPES(cls):
return {
"required": {
"field": ("DATA_FIELD",),
}
}
OUTPUTS = (
('DATA_FIELD', 'leveled'),
)
FUNCTION = "process"
DESCRIPTION = "Shift all values so the maximum is exactly zero."
KEYWORDS = ("offset", "level", "maximum")
def process(self, field: DataField) -> tuple:
data = np.asarray(field.data, dtype=np.float64)
return (field.replace(data=data - data.max()),)

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# Missing Gwyddion Features
Gwyddion 2D image/surface processing features not yet implemented in tono. Excludes force curves, force volume, spectroscopy, volume data, XYZ data, graph operations, and file I/O.
## Leveling / Background Removal
- [x] **Arc Revolve** — Subtract cylindrical arc background fitted by revolving an arc under the data
- [x] **Sphere Revolve** — Subtract spherical cap background
- [x] **Unrotate** — Auto-detect and correct in-plane scan rotation by finding dominant feature directions
- [x] **Level Rotate** — Level by physically rotating the data plane rather than subtracting a polynomial
- [x] **Zero Mean Value** — Shift all values so the mean is exactly zero (pure offset, no plane fit)
- [x] **Zero Maximum Value** — Shift all values so the maximum is exactly zero
## Filtering / Signal Processing
- [ ] **2D CWT** — Continuous Wavelet Transform for scale-space analysis
- [ ] **XY Denoise** — Denoise by combining two orthogonal scans (forward/backward or horizontal/vertical)
- [ ] **Rank Presentation** — Rank transform image for local contrast enhancement
- [ ] **Radial Smoothing** — Smooth data in polar coordinates, averaging along radial or angular direction
- [ ] **Convolve Two Images** — Convolve two separate data channels together
## Line Correction / Scan Artifacts
- [ ] **Step Block Correction** — Correct vertical step offsets between scan lines by block-matching
- [ ] **Good Mean Profile** — Compute a high-quality average scan line from repeated scans
- [ ] **Align Rows (extended methods)** — Modus and Gaussian-weighted row alignment beyond tono's current set
## Correction / Restoration
- [ ] **Fractal Correction** — Fill masked/bad pixels using fractal interpolation (alternative to Laplace)
- [ ] **Correlation Averaging** — Average repeated similar structures using autocorrelation alignment
- [ ] **Coerce** — Force data to match the histogram distribution of another dataset
- [ ] **Periodic Translate** — Translate image data treating the field as periodic (wrap-around shift)
- [ ] **Reorder** — Reorder pixel rows/columns (interleaved to sequential, reverse scan, etc.)
## Statistical Analysis
- [ ] **Transfer Function Fit** — Fit PSF from a known reference image and a measured blurred image
- [ ] **Transfer Function Guess** — Estimate PSF from a single image without a reference
- [ ] **Angle Distribution** — Distribution of surface normal angles (distinct from slope distribution)
## Grain Operations
- [ ] **Otsu Threshold** — Automated grain/mask threshold using Otsu's method
- [ ] **Remove Edge-Touching Grains** — Remove all grains touching the image border from a mask
- [ ] **Grain Selection Shapes** — Create geometric selections (bounding boxes, inscribed discs, etc.) from grain masks
## Mask Operations
- [ ] **Mask Thin** — Morphological thinning to single-pixel-wide skeletons
- [ ] **Mask Distribute** — Copy/distribute a mask to multiple channels simultaneously
- [ ] **Mark With** — Create or modify a mask using arithmetic conditions on other channels
## Basic Operations
- [ ] **Invert Value** — Flip heights (z to -z)
- [ ] **Log Scale Presentation** — Log-scaled presentation layer without modifying source data
- [ ] **Limit Range** — Clamp data values to a specified min/max range
- [ ] **Square Samples** — Resample so pixels are physically square (equal x/y size)
- [ ] **Null Offsets** — Zero out the lateral (XY) origin offsets
## SPM-Specific Modes
- [ ] **MFM Field Simulation** — Simulate magnetic stray field above perpendicular media
- [ ] **MFM Parallel Media** — Simulate MFM signal for in-plane magnetic media
- [ ] **MFM Lift Shift** — Simulate MFM signal change when lift height changes
- [ ] **MFM Lift Estimate** — Estimate lift height difference from data blur
- [ ] **MFM Force Gradient** — Convert MFM raw data to force gradient units
- [ ] **SMM Apply Calibration** — Apply Scanning Microwave Microscopy calibration coefficients
## Synthetic Surface Generators
Tono has one generic Synthetic Surface node. Gwyddion has ~20+ specialized generators:
- [ ] **Fractional Brownian Motion** — fBm rough surfaces with controlled Hurst exponent
- [ ] **Spectral Synthesis** — PSD-specified random rough surfaces
- [ ] **Lattice** — Crystalline lattice surface with defects
- [ ] **Objects** — Randomly placed 3D objects (spheres, pyramids, etc.)
- [ ] **Patterns** — Geometric patterns (staircase, gratings, etc.)
- [ ] **Waves** — Sinusoidal/wave patterns
- [ ] **Noise** — Uncorrelated random noise with configurable distribution
- [ ] **Line Noise** — Synthetic scan-line noise/steps/scars for testing
- [ ] **Fibres** — Random fibre network surfaces
- [ ] **Domain Walls** — Phase-separated domain structures
- [ ] **Columnar Growth** — Columnar thin-film growth simulation
- [ ] **Ball Deposition** — Random ballistic deposition growth
- [ ] **Particle Deposition** — Dynamical particle deposition model
- [ ] **Rod Deposition** — Rod-like particle deposition
- [ ] **Diffusion** — Diffusion-limited aggregation surfaces
- [ ] **Discs** — Random overlapping disc surfaces
- [ ] **CPDE / Turing** — Reaction-diffusion / Turing pattern surfaces
- [ ] **Sand Dunes** — Aeolian sand transport simulation
- [ ] **Annealing Lattice Gas** — Annealed lattice-gas model textures
- [ ] **Phase Separation** — Spinodal decomposition textures
- [ ] **Pileup** — Piled-up ellipsoids or bars
- [ ] **Plateaus** — Stacked random plateau/terrace structures
- [ ] **Film Residue** — Residue left after simulated film removal
- [ ] **Wetting Front** — Propagating wetting front simulation

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# Arc Revolve
Subtract a cylindrical arc background. A circular arc of the given radius is rolled under each row (or column), and the envelope it traces is subtracted as the background.
## Inputs
| Name | Type | Required | Description |
|------|------|----------|-------------|
| field | DATA_FIELD | Yes | Input field |
## Outputs
| Name | Type | Description |
|------|------|-------------|
| leveled | DATA_FIELD | Field with arc background subtracted |
| background | DATA_FIELD | The estimated arc background |
## Controls
| Name | Type | Default | Description |
|------|------|---------|-------------|
| radius | INT | 20 | Arc radius in pixels (11000) |
| direction | dropdown | horizontal | Direction to apply the arc: horizontal, vertical, or both |
## Notes
- Larger radii produce smoother backgrounds that follow gentle curvature. Smaller radii track finer features.
- The "both" direction takes the minimum of horizontal and vertical backgrounds.
- Deep outliers are suppressed before fitting so that scratches or pits do not pull the arc down.

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# Level Rotate
Level by physically rotating the data plane. Fits a best-fit plane, converts its slopes to tilt angles, then rotates the surface by those angles using interpolation rather than algebraic subtraction.
## Inputs
| Name | Type | Required | Description |
|------|------|----------|-------------|
| field | DATA_FIELD | Yes | Input field to level |
## Outputs
| Name | Type | Description |
|------|------|-------------|
| leveled | DATA_FIELD | Field with tilt removed by rotation |
## Notes
- Unlike Plane Level (which subtracts a fitted plane), this node rotates the 3D surface to make it horizontal. The distinction matters for steep tilts where subtraction introduces distortion.
- Uses bilinear interpolation to resample rotated z-values.
- Edges are handled with nearest-neighbor extension.

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# Sphere Revolve
Subtract a spherical cap background. A sphere of the given radius is rolled under the surface, and the envelope it traces is subtracted as the background.
## Inputs
| Name | Type | Required | Description |
|------|------|----------|-------------|
| field | DATA_FIELD | Yes | Input field |
## Outputs
| Name | Type | Description |
|------|------|-------------|
| leveled | DATA_FIELD | Field with spherical background subtracted |
| background | DATA_FIELD | The estimated spherical background |
## Controls
| Name | Type | Default | Description |
|------|------|---------|-------------|
| radius | INT | 20 | Sphere radius in pixels (1500) |
## Notes
- Works like Arc Revolve but in two dimensions — suitable for bowl-shaped or dome-shaped backgrounds.
- Larger radii produce smoother backgrounds. Very small radii will track individual features.
- Deep outliers are suppressed before fitting.

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# Unrotate
Auto-detect and correct in-plane scan rotation. Computes a slope angle histogram, finds the dominant feature direction for the given symmetry, and rotates the image to align features with the axes.
## Inputs
| Name | Type | Required | Description |
|------|------|----------|-------------|
| field | DATA_FIELD | Yes | Input field to correct |
## Outputs
| Name | Type | Description |
|------|------|-------------|
| leveled | DATA_FIELD | Field with rotation corrected |
## Controls
| Name | Type | Default | Description |
|------|------|---------|-------------|
| symmetry | dropdown | 4-fold | Expected symmetry of the surface features: 2-fold, 3-fold, 4-fold, or 6-fold |
## Notes
- Best suited for crystalline or patterned surfaces where features have a clear preferred direction.
- 4-fold symmetry is the most common choice for cubic crystal surfaces and rectangular gratings.
- If the detected rotation is less than 0.01°, the data is returned unchanged.
- Uses bilinear interpolation; edges are handled with nearest-neighbor extension.

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# Zero Maximum
Shift all values so the maximum is exactly zero. All resulting values will be zero or negative.
## Inputs
| Name | Type | Required | Description |
|------|------|----------|-------------|
| field | DATA_FIELD | Yes | Input field to level |
## Outputs
| Name | Type | Description |
|------|------|-------------|
| leveled | DATA_FIELD | Field with maximum subtracted |
## Notes
- Equivalent to subtracting the global maximum from every pixel.
- Useful when the highest point should represent the zero reference.

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docs/nodes/Zero Mean.md Normal file
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# Zero Mean
Shift all values so the mean is exactly zero. A pure offset subtraction — no plane fit or polynomial involved.
## Inputs
| Name | Type | Required | Description |
|------|------|----------|-------------|
| field | DATA_FIELD | Yes | Input field to level |
## Outputs
| Name | Type | Description |
|------|------|-------------|
| leveled | DATA_FIELD | Field with mean subtracted |
## Notes
- Equivalent to subtracting a constant (the mean) from every pixel.
- Does not change relative height differences — only shifts the overall offset.

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import numpy as np
from tests.node_tests._shared import make_field
def test_arc_revolve_horizontal():
from backend.nodes.arc_revolve import ArcRevolve
node = ArcRevolve()
rng = np.random.default_rng(42)
x = np.linspace(0, 1, 64)
bow = 10.0 * x ** 2
data = bow[None, :] + rng.standard_normal((64, 64)) * 0.01
field = make_field(data=data)
leveled, bg = node.process(field, radius=40, direction="horizontal")
assert leveled.data.shape == field.data.shape
assert bg.data.shape == field.data.shape
assert np.allclose(leveled.data + bg.data, data)
def test_arc_revolve_vertical():
from backend.nodes.arc_revolve import ArcRevolve
node = ArcRevolve()
y = np.linspace(0, 1, 64)
data = (5.0 * y ** 2)[:, None] * np.ones((1, 64))
field = make_field(data=data)
leveled, bg = node.process(field, radius=40, direction="vertical")
assert np.allclose(leveled.data + bg.data, data)
def test_arc_revolve_both():
from backend.nodes.arc_revolve import ArcRevolve
node = ArcRevolve()
y, x = np.mgrid[:32, :32] / 32.0
data = 5.0 * x ** 2 + 3.0 * y ** 2
field = make_field(data=data)
leveled, bg = node.process(field, radius=30, direction="both")
assert leveled.data.shape == data.shape
assert bg.data.shape == data.shape
def test_arc_revolve_flat_passthrough():
from backend.nodes.arc_revolve import ArcRevolve
node = ArcRevolve()
data = np.ones((32, 32)) * 5.0
field = make_field(data=data)
leveled, bg = node.process(field, radius=20, direction="horizontal")
assert leveled.data.std() < 1e-10
assert np.allclose(leveled.data + bg.data, data)

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import numpy as np
from tests.node_tests._shared import make_field
def test_level_rotate_removes_tilt():
from backend.nodes.level_rotate import LevelRotate
node = LevelRotate()
y, x = np.mgrid[:64, :64].astype(np.float64)
data = 2.0 * x + 3.0 * y
field = make_field(data=data)
(result,) = node.process(field)
assert result.data.shape == data.shape
assert result.data.std() < data.std() * 0.25
def test_level_rotate_preserves_shape():
from backend.nodes.level_rotate import LevelRotate
node = LevelRotate()
data = np.random.default_rng(42).standard_normal((48, 48))
field = make_field(data=data)
(result,) = node.process(field)
assert result.data.shape == (48, 48)
def test_level_rotate_flat_noop():
from backend.nodes.level_rotate import LevelRotate
node = LevelRotate()
data = np.ones((32, 32)) * 7.0
field = make_field(data=data)
(result,) = node.process(field)
assert np.allclose(result.data, 7.0, atol=1e-6)

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import numpy as np
from tests.node_tests._shared import make_field
def test_sphere_revolve_basic():
from backend.nodes.sphere_revolve import SphereRevolve
node = SphereRevolve()
y, x = np.mgrid[:64, :64] / 64.0
data = 10.0 * (x ** 2 + y ** 2)
field = make_field(data=data)
leveled, bg = node.process(field, radius=30)
assert leveled.data.shape == data.shape
assert bg.data.shape == data.shape
assert np.allclose(leveled.data + bg.data, data)
def test_sphere_revolve_flat():
from backend.nodes.sphere_revolve import SphereRevolve
node = SphereRevolve()
data = np.ones((32, 32)) * 3.0
field = make_field(data=data)
leveled, bg = node.process(field, radius=20)
assert leveled.data.std() < 1e-10
assert np.allclose(leveled.data + bg.data, data)
def test_sphere_revolve_outputs_two_fields():
from backend.nodes.sphere_revolve import SphereRevolve
node = SphereRevolve()
data = np.random.default_rng(7).standard_normal((32, 32))
field = make_field(data=data)
result = node.process(field, radius=15)
assert len(result) == 2
leveled, bg = result
assert np.allclose(leveled.data + bg.data, data)

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import numpy as np
from tests.node_tests._shared import make_field
def test_unrotate_preserves_shape():
from backend.nodes.unrotate import Unrotate
node = Unrotate()
data = np.random.default_rng(42).standard_normal((64, 64))
field = make_field(data=data)
(result,) = node.process(field, symmetry="4-fold")
assert result.data.shape == (64, 64)
def test_unrotate_small_angle():
from backend.nodes.unrotate import Unrotate, _slope_angle_histogram, _find_dominant_angle
y, x = np.mgrid[:128, :128].astype(np.float64)
angle_deg = 3.0
angle_rad = np.radians(angle_deg)
data = np.sin(2 * np.pi * (x * np.cos(angle_rad) + y * np.sin(angle_rad)) / 20.0)
hist = _slope_angle_histogram(data)
correction = _find_dominant_angle(hist, 4)
assert abs(np.degrees(correction)) < 10.0
def test_unrotate_no_rotation_passthrough():
from backend.nodes.unrotate import Unrotate
node = Unrotate()
y, x = np.mgrid[:64, :64].astype(np.float64)
data = np.sin(2 * np.pi * x / 16.0)
field = make_field(data=data)
(result,) = node.process(field, symmetry="4-fold")
assert np.allclose(result.data, data, atol=0.1)
def test_unrotate_symmetry_options():
from backend.nodes.unrotate import Unrotate
node = Unrotate()
data = np.random.default_rng(99).standard_normal((64, 64))
field = make_field(data=data)
for sym in ["2-fold", "3-fold", "4-fold", "6-fold"]:
(result,) = node.process(field, symmetry=sym)
assert result.data.shape == (64, 64)

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import numpy as np
from tests.node_tests._shared import make_field
def test_zero_mean():
from backend.nodes.zero_value import ZeroMean
node = ZeroMean()
data = np.random.default_rng(42).standard_normal((64, 64)) + 100.0
field = make_field(data=data)
(result,) = node.process(field)
assert result.data.shape == field.data.shape
assert abs(result.data.mean()) < 1e-10
def test_zero_mean_preserves_variation():
from backend.nodes.zero_value import ZeroMean
node = ZeroMean()
data = np.random.default_rng(7).standard_normal((32, 32)) + 50.0
field = make_field(data=data)
(result,) = node.process(field)
assert np.allclose(result.data - result.data.mean(), data - data.mean())
def test_zero_maximum():
from backend.nodes.zero_value import ZeroMaximum
node = ZeroMaximum()
data = np.random.default_rng(42).standard_normal((64, 64)) + 100.0
field = make_field(data=data)
(result,) = node.process(field)
assert result.data.shape == field.data.shape
assert abs(result.data.max()) < 1e-10
assert result.data.min() < 0
def test_zero_maximum_preserves_differences():
from backend.nodes.zero_value import ZeroMaximum
node = ZeroMaximum()
data = np.array([[1.0, 3.0], [2.0, 5.0]])
field = make_field(data=data)
(result,) = node.process(field)
expected = data - 5.0
assert np.allclose(result.data, expected)