add nodes, fft acf 1d
This commit is contained in:
@@ -2,6 +2,7 @@
|
||||
from backend.nodes import (
|
||||
# IO
|
||||
image,
|
||||
ibw_note,
|
||||
image_demo,
|
||||
folder,
|
||||
coordinate,
|
||||
@@ -51,7 +52,8 @@ from backend.nodes import (
|
||||
fractal_dimension,
|
||||
statistics_node,
|
||||
histogram,
|
||||
acf,
|
||||
acf_2d,
|
||||
acf_1d,
|
||||
cursors,
|
||||
fft_2d,
|
||||
psdf,
|
||||
@@ -60,4 +62,5 @@ from backend.nodes import (
|
||||
stats,
|
||||
watershed_segmentation,
|
||||
grain_analysis,
|
||||
fft_1d,
|
||||
)
|
||||
|
||||
61
backend/nodes/acf_1d.py
Normal file
61
backend/nodes/acf_1d.py
Normal file
@@ -0,0 +1,61 @@
|
||||
from __future__ import annotations
|
||||
|
||||
import numpy as np
|
||||
|
||||
from backend.node_registry import register_node
|
||||
from backend.data_types import LineData, MeasureTable
|
||||
from backend.nodes.spectral_common import acf_line_from_data
|
||||
|
||||
|
||||
def _first_positive_peak(acf: np.ndarray, lag_axis: np.ndarray) -> float | None:
|
||||
"""Return the lag of the first local maximum in the positive-lag half of the ACF."""
|
||||
center = len(acf) // 2
|
||||
pos_acf = acf[center + 1:]
|
||||
pos_lags = lag_axis[center + 1:]
|
||||
for i in range(1, len(pos_acf) - 1):
|
||||
if pos_acf[i] >= pos_acf[i - 1] and pos_acf[i] > pos_acf[i + 1]:
|
||||
return float(pos_lags[i])
|
||||
return None
|
||||
|
||||
|
||||
@register_node(display_name="ACF 1D")
|
||||
class ACF1D:
|
||||
@classmethod
|
||||
def INPUT_TYPES(cls):
|
||||
return {
|
||||
"required": {
|
||||
"profile": ("LINE", {
|
||||
"label": "input",
|
||||
"accepted_types": ["LINE"],
|
||||
}),
|
||||
"level": (["mean", "none"], {"default": "mean"}),
|
||||
}
|
||||
}
|
||||
|
||||
OUTPUTS = (
|
||||
('LINE', 'acf'),
|
||||
('MEASURE_TABLE', 'measurement'),
|
||||
)
|
||||
FUNCTION = "process"
|
||||
|
||||
DESCRIPTION = (
|
||||
"Compute the one-dimensional autocorrelation function of a line profile. "
|
||||
"The output is symmetric about zero lag with the lag on the x-axis. "
|
||||
"The measurement table reports the dominant period from the first positive peak."
|
||||
)
|
||||
|
||||
def process(self, profile: LineData, level: str) -> tuple:
|
||||
z = np.asarray(profile, dtype=np.float64)
|
||||
if level == "mean":
|
||||
z = z - z.mean()
|
||||
|
||||
acf_line = acf_line_from_data(profile, z)
|
||||
|
||||
x_unit = profile.x_unit if isinstance(profile, LineData) else ""
|
||||
peak_lag = _first_positive_peak(acf_line.data, acf_line.x_axis)
|
||||
|
||||
rows = []
|
||||
if peak_lag is not None:
|
||||
rows.append({"quantity": "Peak period", "value": peak_lag, "unit": x_unit})
|
||||
|
||||
return (acf_line, MeasureTable(rows))
|
||||
@@ -5,8 +5,8 @@ from backend.data_types import DataField
|
||||
from backend.nodes.spectral_common import acf_field_from_data, preprocess_spectral_data
|
||||
|
||||
|
||||
@register_node(display_name="ACF")
|
||||
class ACF:
|
||||
@register_node(display_name="ACF 2D")
|
||||
class ACF2D:
|
||||
@classmethod
|
||||
def INPUT_TYPES(cls):
|
||||
return {
|
||||
@@ -106,8 +106,10 @@ class Cursors:
|
||||
"b_locked": locked,
|
||||
})
|
||||
|
||||
length = float(np.hypot(xb - xa, yb - ya))
|
||||
table = MeasureTable([
|
||||
{"quantity": "dx", "value": xb - xa, "unit": x_unit},
|
||||
{"quantity": "Length", "value": length, "unit": x_unit},
|
||||
{"quantity": "dx", "value": xb - xa, "unit": x_unit},
|
||||
{"quantity": "dy", "value": yb - ya, "unit": y_unit},
|
||||
{"quantity": "A x", "value": xa, "unit": x_unit},
|
||||
{"quantity": "A y", "value": ya, "unit": y_unit},
|
||||
|
||||
70
backend/nodes/fft_1d.py
Normal file
70
backend/nodes/fft_1d.py
Normal file
@@ -0,0 +1,70 @@
|
||||
from __future__ import annotations
|
||||
|
||||
import numpy as np
|
||||
|
||||
from backend.node_registry import register_node
|
||||
from backend.data_types import LineData, MeasureTable
|
||||
|
||||
|
||||
@register_node(display_name="FFT 1D")
|
||||
class FFT1D:
|
||||
@classmethod
|
||||
def INPUT_TYPES(cls):
|
||||
return {
|
||||
"required": {
|
||||
"profile": ("LINE", {
|
||||
"label": "input",
|
||||
"accepted_types": ["LINE"],
|
||||
}),
|
||||
}
|
||||
}
|
||||
|
||||
OUTPUTS = (
|
||||
("LINE", "frequency_plot"),
|
||||
('MEASURE_TABLE', 'measurement'),
|
||||
)
|
||||
|
||||
FUNCTION = "process"
|
||||
|
||||
DESCRIPTION = (
|
||||
"Returns the FFT spectrum of the line, and identifies peaks."
|
||||
)
|
||||
|
||||
_broadcast_overlay_fn = None
|
||||
_current_node_id: str = ""
|
||||
|
||||
def process(
|
||||
self, profile,
|
||||
) -> tuple:
|
||||
line_data = np.asarray(profile, dtype=np.float64)
|
||||
n = len(line_data)
|
||||
|
||||
if isinstance(profile, LineData) and profile.x_axis is not None and len(profile.x_axis) > 1:
|
||||
d = float(profile.x_axis[1] - profile.x_axis[0])
|
||||
spatial_unit = profile.x_unit or "m"
|
||||
else:
|
||||
d = 1.0
|
||||
spatial_unit = "m"
|
||||
|
||||
spectrum = np.abs(np.fft.rfft(line_data))
|
||||
freq_axis = np.fft.rfftfreq(n, d)
|
||||
|
||||
# Exclude DC component, convert to period, sort short→long
|
||||
spectrum = spectrum[1:][::-1]
|
||||
period_axis = (1.0 / freq_axis[1:])[::-1]
|
||||
|
||||
peak_period = float(period_axis[np.argmax(spectrum)])
|
||||
|
||||
table = MeasureTable([
|
||||
{"quantity": "Peak period", "value": peak_period, "unit": spatial_unit},
|
||||
])
|
||||
|
||||
return (
|
||||
LineData(
|
||||
data=spectrum,
|
||||
x_axis=period_axis,
|
||||
x_unit=spatial_unit,
|
||||
y_unit=profile.y_unit if isinstance(profile, LineData) else "",
|
||||
),
|
||||
table,
|
||||
)
|
||||
@@ -89,8 +89,8 @@ class Histogram:
|
||||
})
|
||||
|
||||
table = MeasureTable([
|
||||
{"quantity": "delta X", "value": xb - xa, "unit": field.si_unit_z},
|
||||
{"quantity": "delta Y", "value": yb - ya, "unit": count_unit},
|
||||
{"quantity": "delta X", "value": xb - xa, "unit": field.si_unit_z},
|
||||
{"quantity": "A position", "value": xa, "unit": field.si_unit_z},
|
||||
{"quantity": "A count", "value": ya, "unit": count_unit},
|
||||
{"quantity": "B position", "value": xb, "unit": field.si_unit_z},
|
||||
|
||||
78
backend/nodes/ibw_note.py
Normal file
78
backend/nodes/ibw_note.py
Normal file
@@ -0,0 +1,78 @@
|
||||
from __future__ import annotations
|
||||
|
||||
import re
|
||||
|
||||
from backend.node_registry import register_node
|
||||
from backend.data_types import MeasureTable
|
||||
from backend.nodes.helpers import _resolve_path, _import_ibw_loader
|
||||
|
||||
|
||||
def _parse_ibw_note(note_bytes: bytes) -> list[dict]:
|
||||
try:
|
||||
text = note_bytes.decode("utf-8", errors="replace")
|
||||
except Exception:
|
||||
return []
|
||||
|
||||
rows = []
|
||||
for line in text.splitlines():
|
||||
line = line.strip()
|
||||
if not line:
|
||||
continue
|
||||
match = re.match(r'^([^:=]+)[=:](.+)$', line)
|
||||
if not match:
|
||||
continue
|
||||
key = match.group(1).strip()
|
||||
raw_val = match.group(2).strip()
|
||||
if not key:
|
||||
continue
|
||||
try:
|
||||
value = float(raw_val)
|
||||
except (ValueError, TypeError):
|
||||
continue
|
||||
rows.append({"quantity": key, "value": value, "unit": ""})
|
||||
|
||||
return rows
|
||||
|
||||
|
||||
@register_node(display_name="IBW Note")
|
||||
class IBWNote:
|
||||
@classmethod
|
||||
def INPUT_TYPES(cls):
|
||||
return {
|
||||
"required": {
|
||||
"filename": ("FILE_PICKER", {"default": "", "hide_when_input_connected": "path"}),
|
||||
},
|
||||
"optional": {
|
||||
"path": ("FILE_PATH", {"label": "path"}),
|
||||
},
|
||||
}
|
||||
|
||||
OUTPUTS = (
|
||||
('MEASURE_TABLE', 'note'),
|
||||
)
|
||||
FUNCTION = "load"
|
||||
|
||||
DESCRIPTION = (
|
||||
"Read the Note metadata from an .ibw file and display numeric entries "
|
||||
"as a measurement table. Non-numeric note entries are skipped."
|
||||
)
|
||||
|
||||
def load(self, filename: str = "", path: str | None = None) -> tuple:
|
||||
selected = str(path).strip() if path is not None else str(filename).strip()
|
||||
if not selected:
|
||||
raise ValueError("No file selected.")
|
||||
path_obj = _resolve_path(selected)
|
||||
if not path_obj.exists():
|
||||
raise FileNotFoundError(f"File not found: {path_obj}")
|
||||
if path_obj.suffix.lower() != ".ibw":
|
||||
raise ValueError(f"Expected an .ibw file, got: {path_obj.suffix}")
|
||||
|
||||
load_ibw = _import_ibw_loader()
|
||||
wave = load_ibw(str(path_obj))
|
||||
note_bytes = wave["wave"].get("note", b"") or b""
|
||||
|
||||
rows = _parse_ibw_note(note_bytes)
|
||||
if not rows:
|
||||
raise ValueError("No numeric metadata found in the .ibw note.")
|
||||
|
||||
return (MeasureTable(rows),)
|
||||
@@ -127,6 +127,35 @@ def psdf_field_from_data(field: DataField, data: np.ndarray) -> DataField:
|
||||
)
|
||||
|
||||
|
||||
def acf_line_from_data(profile, data: np.ndarray, *, nrange: int = 0):
|
||||
from scipy.signal import fftconvolve
|
||||
from backend.data_types import LineData
|
||||
|
||||
z = np.asarray(data, dtype=np.float64).ravel()
|
||||
n = len(z)
|
||||
nrange = int(nrange) if nrange else max(1, n // 2)
|
||||
nrange = max(1, min(nrange, n))
|
||||
|
||||
corr_full = fftconvolve(z, z[::-1], mode="full")
|
||||
center = n - 1
|
||||
corr = corr_full[center - (nrange - 1):center + nrange]
|
||||
|
||||
counts = np.array([n - abs(lag) for lag in range(-(nrange - 1), nrange)], dtype=np.float64)
|
||||
acf = corr / counts
|
||||
|
||||
x_unit = profile.x_unit if hasattr(profile, "x_unit") else ""
|
||||
y_unit = _square_unit(profile.y_unit) if hasattr(profile, "y_unit") and profile.y_unit else ""
|
||||
|
||||
if hasattr(profile, "x_axis") and profile.x_axis is not None and len(profile.x_axis) > 1:
|
||||
d = float(profile.x_axis[1] - profile.x_axis[0])
|
||||
else:
|
||||
d = 1.0
|
||||
|
||||
lag_axis = np.arange(-(nrange - 1), nrange, dtype=np.float64) * d
|
||||
|
||||
return LineData(data=acf, x_axis=lag_axis, x_unit=x_unit, y_unit=y_unit)
|
||||
|
||||
|
||||
def acf_field_from_data(field: DataField, data: np.ndarray, *, xrange: int = 0, yrange: int = 0) -> DataField:
|
||||
from scipy.signal import fftconvolve
|
||||
|
||||
|
||||
Reference in New Issue
Block a user