move importer test fixture into separate repo

This commit is contained in:
2026-04-04 16:23:58 -07:00
parent 450fe91124
commit 87c61ac8a3
24 changed files with 21 additions and 2882 deletions

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@@ -10,6 +10,8 @@ jobs:
steps: steps:
- uses: actions/checkout@v4 - uses: actions/checkout@v4
with:
submodules: recursive
- uses: actions/setup-python@v5 - uses: actions/setup-python@v5
with: with:

3
.gitignore vendored
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@@ -14,4 +14,5 @@ frontend/dist/
.venv/ .venv/
sessions/ sessions/
frontend/coverage/ frontend/coverage/
usage_stats.json usage_stats.json
tests/output/*.png

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@@ -2,11 +2,20 @@ from pathlib import Path
from unittest.mock import patch from unittest.mock import patch
import numpy as np import numpy as np
import pytest
from backend.data_types import DataField from backend.data_types import DataField
from backend.execution import ExecutionEngine from backend.execution import ExecutionEngine
import backend.nodes # noqa: F401 import backend.nodes # noqa: F401
FIXTURES = Path(__file__).parent.parent / "output" FIXTURES = Path(__file__).parent.parent / "fixtures"
pytestmark = pytest.mark.skipif(
not (FIXTURES / "Bacteria.ibw").exists() or not (FIXTURES / "nanoparticles.npy").exists(),
reason=(
"tono-test-data fixtures not available — "
"run `git submodule update --init tests/fixtures`"
),
)
def test_load_npy(): def test_load_npy():

View File

@@ -11,7 +11,10 @@ import pytest
from backend.data_types import DataField from backend.data_types import DataField
FIXTURES = Path(__file__).parent.parent / "output" FIXTURES = Path(__file__).parent.parent / "fixtures"
_SUBMODULE_HINT = (
"run `git submodule update --init tests/fixtures` to fetch the tono-test-data submodule"
)
# ── Registry ───────────────────────────────────────────────────────────────── # ── Registry ─────────────────────────────────────────────────────────────────
@@ -122,7 +125,7 @@ class TestArrayImageImporter:
def test_fixture_npy(self): def test_fixture_npy(self):
path = FIXTURES / "nanoparticles.npy" path = FIXTURES / "nanoparticles.npy"
if not path.exists(): if not path.exists():
pytest.skip("fixture not available") pytest.skip(f"nanoparticles.npy fixture not available{_SUBMODULE_HINT}")
fields = self.mod.load(path) fields = self.mod.load(path)
assert len(fields) == 1 assert len(fields) == 1
assert fields[0].data.ndim == 2 assert fields[0].data.ndim == 2
@@ -144,7 +147,7 @@ class TestIBWImporter:
def test_load_fixture(self): def test_load_fixture(self):
if not self.fixture.exists(): if not self.fixture.exists():
pytest.skip("Bacteria.ibw fixture not available") pytest.skip(f"Bacteria.ibw fixture not available{_SUBMODULE_HINT}")
fields = self.mod.load(self.fixture) fields = self.mod.load(self.fixture)
assert len(fields) == 4 assert len(fields) == 4
for f in fields: for f in fields:
@@ -156,7 +159,7 @@ class TestIBWImporter:
def test_channel_names_fixture(self): def test_channel_names_fixture(self):
if not self.fixture.exists(): if not self.fixture.exists():
pytest.skip("Bacteria.ibw fixture not available") pytest.skip(f"Bacteria.ibw fixture not available{_SUBMODULE_HINT}")
names = self.mod.channel_names(self.fixture) names = self.mod.channel_names(self.fixture)
assert len(names) == 4 assert len(names) == 4
assert all(isinstance(n, str) for n in names) assert all(isinstance(n, str) for n in names)

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