hdf5 support

This commit is contained in:
2026-03-30 20:33:28 -07:00
parent 53e43e8761
commit 7b309a8b23
15 changed files with 1079 additions and 206 deletions

View File

@@ -527,13 +527,9 @@ OUTPUT_DIR = output_dir()
_MAX_SAVE_FIELDS = 8
_DEMO_EXTENSIONS = {".png", ".jpg", ".jpeg", ".tiff", ".tif", ".npy", ".npz",
".gwy", ".sxm", ".ibw"}
from backend.importers import all_extensions, get_importer
_SPM_EXTENSIONS = {".gwy", ".sxm", ".ibw"}
_IMAGE_EXTENSIONS = {".png", ".jpg", ".jpeg", ".tiff", ".tif", ".bmp"}
_ARRAY_EXTENSIONS = {".npy", ".npz"}
_PATH_COMPATIBLE_EXTENSIONS = _IMAGE_EXTENSIONS | _ARRAY_EXTENSIONS | _SPM_EXTENSIONS
_PATH_COMPATIBLE_EXTENSIONS = all_extensions()
def _resolve_path(filepath: str):
@@ -554,52 +550,16 @@ def list_channels(filepath: str) -> list[dict]:
if not path.exists():
return [{"name": "field", "type": "DATA_FIELD"}]
ext = path.suffix.lower()
if ext == ".gwy":
try:
import gwyfile
obj = gwyfile.load(str(path))
channels = gwyfile.util.get_datafields(obj)
if channels:
return [{"name": k, "type": "DATA_FIELD"} for k in channels]
except Exception:
pass
return [{"name": "field", "type": "DATA_FIELD"}]
if ext == ".sxm":
try:
import nanonispy as nap
sxm = nap.read.Scan(str(path))
if sxm.signals:
return [{"name": k, "type": "DATA_FIELD"} for k in sxm.signals]
except Exception:
pass
return [{"name": "field", "type": "DATA_FIELD"}]
if ext == ".ibw":
try:
load_ibw = _import_ibw_loader()
wave = load_ibw(str(path))
raw = wave["wave"]["wData"]
labels = wave["wave"].get("labels", None)
if raw.ndim >= 3 and labels:
dim_idx = min(2, len(labels) - 1)
if dim_idx >= 0 and labels[dim_idx]:
decoded = []
for lbl in labels[dim_idx]:
if lbl:
name = lbl.split(b"\x00")[0].decode("ascii", errors="replace").strip()
if name:
decoded.append(name)
if decoded:
return [{"name": n, "type": "DATA_FIELD"} for n in decoded]
if raw.ndim >= 3 and raw.shape[2] > 1:
return [{"name": f"ch{i}", "type": "DATA_FIELD"} for i in range(raw.shape[2])]
except Exception:
pass
importer = get_importer(path.suffix.lower())
if importer is None:
return [{"name": "field", "type": "DATA_FIELD"}]
try:
names = importer.channel_names(path)
if names:
return [{"name": n, "type": "DATA_FIELD"} for n in names]
except Exception:
pass
return [{"name": "field", "type": "DATA_FIELD"}]
@@ -624,7 +584,7 @@ def _list_demo_files() -> list[str]:
return []
return sorted(
f.name for f in DEMO_DIR.iterdir()
if f.is_file() and not f.name.startswith(".") and f.suffix.lower() in _DEMO_EXTENSIONS
if f.is_file() and not f.name.startswith(".") and f.suffix.lower() in _PATH_COMPATIBLE_EXTENSIONS
)