feature focus on 3d viewer, add copy/paste
This commit is contained in:
@@ -8,6 +8,7 @@ from backend.nodes import (
|
||||
coordinate_pair,
|
||||
number,
|
||||
range_slider,
|
||||
save,
|
||||
save_image,
|
||||
# Filters
|
||||
gaussian_filter,
|
||||
|
||||
@@ -1,16 +1,28 @@
|
||||
from __future__ import annotations
|
||||
import numpy as np
|
||||
from backend.node_registry import register_node
|
||||
from backend.data_types import COLORMAPS, DataField, normalize_font_spec, resolve_colormap_input
|
||||
from backend.data_types import (
|
||||
COLORMAPS,
|
||||
DataField,
|
||||
ImageData,
|
||||
_apply_annotation_overlay_from_context,
|
||||
_annotation_context_from_image,
|
||||
image_to_uint8,
|
||||
normalize_font_spec,
|
||||
resolve_colormap_input,
|
||||
)
|
||||
|
||||
|
||||
@register_node(display_name="Annotations")
|
||||
class Annotations:
|
||||
_broadcast_warning_fn = None
|
||||
_current_node_id: str = ""
|
||||
|
||||
@classmethod
|
||||
def INPUT_TYPES(cls):
|
||||
return {
|
||||
"required": {
|
||||
"field": ("DATA_FIELD",),
|
||||
"input": ("ANNOTATION_SOURCE", {"label": "Input"}),
|
||||
"colormap": (["auto"] + list(COLORMAPS), {"hide_when_input_connected": "colormap_map"}),
|
||||
"show_scale_bar": ("BOOLEAN", {"default": True}),
|
||||
"show_color_map": ("BOOLEAN", {"default": True}),
|
||||
@@ -27,18 +39,18 @@ class Annotations:
|
||||
},
|
||||
}
|
||||
|
||||
RETURN_TYPES = ("DATA_FIELD",)
|
||||
RETURN_NAMES = ("annotated",)
|
||||
RETURN_TYPES = ("ANNOTATION_SOURCE",)
|
||||
RETURN_NAMES = ("Output",)
|
||||
FUNCTION = "render"
|
||||
|
||||
DESCRIPTION = (
|
||||
"Attach optional publication-style annotations to a DATA_FIELD without flattening the raw data. "
|
||||
"The preview shows a scale bar and/or side colour legend, while downstream field operations keep the underlying AFM values."
|
||||
"Attach optional publication-style annotations to a DATA_FIELD without flattening the raw data, "
|
||||
"or annotate an IMAGE that carries viewport metadata from View3D."
|
||||
)
|
||||
|
||||
def render(
|
||||
self,
|
||||
field: DataField,
|
||||
input,
|
||||
colormap: str,
|
||||
show_scale_bar: bool,
|
||||
show_color_map: bool,
|
||||
@@ -46,24 +58,69 @@ class Annotations:
|
||||
colormap_map=None,
|
||||
font=None,
|
||||
) -> tuple:
|
||||
annotation_spec = {
|
||||
"kind": "annotation",
|
||||
"show_scale_bar": bool(show_scale_bar),
|
||||
"show_color_map": bool(show_color_map),
|
||||
"text_size": float(np.clip(text_size, 6.0, 96.0)) if np.isfinite(text_size) else 14.0,
|
||||
"font": normalize_font_spec(font),
|
||||
}
|
||||
|
||||
if isinstance(input, DataField):
|
||||
resolved_colormap = resolve_colormap_input(
|
||||
colormap,
|
||||
colormap_input=colormap_map,
|
||||
inherited=input.colormap,
|
||||
default="gray",
|
||||
)
|
||||
out = input.replace(
|
||||
colormap=resolved_colormap,
|
||||
overlays=[
|
||||
*input.overlays,
|
||||
annotation_spec,
|
||||
],
|
||||
)
|
||||
return (out,)
|
||||
|
||||
context = _annotation_context_from_image(input)
|
||||
if context is None:
|
||||
self._send_warning(
|
||||
"Annotations image input has no scale metadata, so scale bar and color-map legend cannot be added."
|
||||
)
|
||||
return (ImageData(image_to_uint8(input)),)
|
||||
|
||||
resolved_colormap = resolve_colormap_input(
|
||||
colormap,
|
||||
colormap_input=colormap_map,
|
||||
inherited=field.colormap,
|
||||
inherited=context.get("colormap"),
|
||||
default="gray",
|
||||
)
|
||||
text_size = float(np.clip(text_size, 6.0, 96.0)) if np.isfinite(text_size) else 14.0
|
||||
out = field.replace(
|
||||
colormap=resolved_colormap,
|
||||
overlays=[
|
||||
*field.overlays,
|
||||
{
|
||||
"kind": "annotation",
|
||||
"show_scale_bar": bool(show_scale_bar),
|
||||
"show_color_map": bool(show_color_map),
|
||||
"text_size": text_size,
|
||||
"font": normalize_font_spec(font),
|
||||
},
|
||||
],
|
||||
context["colormap"] = resolved_colormap
|
||||
missing_features = []
|
||||
xreal = context.get("xreal")
|
||||
if bool(show_scale_bar) and not (isinstance(xreal, (int, float)) and np.isfinite(float(xreal)) and float(xreal) > 0 and str(context.get("si_unit_xy", "")).strip()):
|
||||
missing_features.append("scale bar")
|
||||
if bool(show_color_map):
|
||||
legend_values = (context.get("legend_min"), context.get("legend_mid"), context.get("legend_max"))
|
||||
has_legend_values = all(
|
||||
isinstance(value, (int, float)) and np.isfinite(float(value))
|
||||
for value in legend_values
|
||||
)
|
||||
if not (has_legend_values and str(context.get("legend_unit", "")).strip()):
|
||||
missing_features.append("color-map legend")
|
||||
if missing_features:
|
||||
self._send_warning(
|
||||
f"Annotations image input is missing metadata for: {', '.join(missing_features)}."
|
||||
)
|
||||
annotated = _apply_annotation_overlay_from_context(
|
||||
image_to_uint8(input),
|
||||
context,
|
||||
annotation_spec,
|
||||
)
|
||||
return (out,)
|
||||
return (ImageData(annotated, metadata={"annotation_context": context}),)
|
||||
|
||||
def _send_warning(self, message: str):
|
||||
fn = Annotations._broadcast_warning_fn
|
||||
nid = Annotations._current_node_id
|
||||
if fn and nid:
|
||||
fn(nid, message)
|
||||
|
||||
@@ -1,4 +1,5 @@
|
||||
from __future__ import annotations
|
||||
from functools import lru_cache
|
||||
import numpy as np
|
||||
from pathlib import Path
|
||||
|
||||
@@ -48,17 +49,21 @@ class Image:
|
||||
|
||||
ext = path_obj.suffix.lower()
|
||||
resolved_colormap = resolve_colormap_input(colormap, colormap_input=colormap_map, default="viridis")
|
||||
stat = path_obj.stat()
|
||||
cached_fields = Image._load_fields_cached(
|
||||
str(path_obj.resolve()),
|
||||
int(stat.st_mtime_ns),
|
||||
int(stat.st_size),
|
||||
)
|
||||
fields = tuple(field.copy() for field in cached_fields)
|
||||
|
||||
if ext in _SPM_EXTENSIONS:
|
||||
fields = self._load_spm_all(path_obj, ext)
|
||||
for f in fields:
|
||||
f.colormap = resolved_colormap
|
||||
return tuple(fields)
|
||||
for field in fields:
|
||||
field.colormap = resolved_colormap
|
||||
|
||||
field = self._load_image_or_array(path_obj, ext)
|
||||
field.colormap = resolved_colormap
|
||||
self._send_warning("Uncalibrated data — no physical dimensions.")
|
||||
return (field,)
|
||||
if ext not in _SPM_EXTENSIONS:
|
||||
self._send_warning("Uncalibrated data — no physical dimensions.")
|
||||
|
||||
return fields
|
||||
|
||||
def _send_warning(self, message: str):
|
||||
fn = Image._broadcast_warning_fn
|
||||
@@ -66,17 +71,28 @@ class Image:
|
||||
if fn and nid:
|
||||
fn(nid, message)
|
||||
|
||||
def _load_spm_all(self, path: Path, ext: str) -> list[DataField]:
|
||||
@staticmethod
|
||||
@lru_cache(maxsize=32)
|
||||
def _load_fields_cached(path_str: str, mtime_ns: int, size_bytes: int) -> tuple[DataField, ...]:
|
||||
path = Path(path_str)
|
||||
ext = path.suffix.lower()
|
||||
if ext in _SPM_EXTENSIONS:
|
||||
return tuple(Image._load_spm_all(path, ext))
|
||||
return (Image._load_image_or_array(path, ext),)
|
||||
|
||||
@staticmethod
|
||||
def _load_spm_all(path: Path, ext: str) -> list[DataField]:
|
||||
if ext == ".gwy":
|
||||
return self._load_gwy_all(path)
|
||||
return Image._load_gwy_all(path)
|
||||
elif ext == ".sxm":
|
||||
return self._load_sxm_all(path)
|
||||
return Image._load_sxm_all(path)
|
||||
elif ext == ".ibw":
|
||||
return self._load_ibw_all(path)
|
||||
return Image._load_ibw_all(path)
|
||||
else:
|
||||
raise ValueError(f"Unsupported SPM format: {ext}")
|
||||
|
||||
def _load_gwy_all(self, path: Path) -> list[DataField]:
|
||||
@staticmethod
|
||||
def _load_gwy_all(path: Path) -> list[DataField]:
|
||||
try:
|
||||
import gwyfile
|
||||
except ImportError:
|
||||
@@ -101,7 +117,8 @@ class Image:
|
||||
))
|
||||
return fields
|
||||
|
||||
def _load_sxm_all(self, path: Path) -> list[DataField]:
|
||||
@staticmethod
|
||||
def _load_sxm_all(path: Path) -> list[DataField]:
|
||||
try:
|
||||
import nanonispy as nap
|
||||
except ImportError:
|
||||
@@ -130,7 +147,8 @@ class Image:
|
||||
))
|
||||
return fields
|
||||
|
||||
def _load_ibw_all(self, path: Path) -> list[DataField]:
|
||||
@staticmethod
|
||||
def _load_ibw_all(path: Path) -> list[DataField]:
|
||||
try:
|
||||
from igor.binarywave import load as load_ibw
|
||||
except ImportError:
|
||||
@@ -193,7 +211,8 @@ class Image:
|
||||
|
||||
return fields
|
||||
|
||||
def _load_image_or_array(self, path: Path, ext: str) -> DataField:
|
||||
@staticmethod
|
||||
def _load_image_or_array(path: Path, ext: str) -> DataField:
|
||||
if ext == ".npy":
|
||||
arr = np.load(str(path)).astype(np.float64)
|
||||
elif ext == ".npz":
|
||||
|
||||
@@ -1,6 +1,14 @@
|
||||
from __future__ import annotations
|
||||
from backend.node_registry import register_node
|
||||
from backend.data_types import DataField, datafield_to_uint8, encode_preview
|
||||
from backend.data_types import (
|
||||
DataField,
|
||||
ImageData,
|
||||
_apply_markup_overlay,
|
||||
encode_preview,
|
||||
image_metadata,
|
||||
image_to_uint8,
|
||||
render_datafield_preview,
|
||||
)
|
||||
from backend.nodes.helpers import _parse_markup_shapes, _normalize_markup_color
|
||||
|
||||
|
||||
@@ -12,7 +20,7 @@ class Markup:
|
||||
def INPUT_TYPES(cls):
|
||||
return {
|
||||
"required": {
|
||||
"field": ("DATA_FIELD",),
|
||||
"input": ("ANNOTATION_SOURCE", {"label": "Input"}),
|
||||
"shape": (["line", "rectangle", "circle", "arrow"], {"default": "line"}),
|
||||
"stroke_color": ("STRING", {"default": "#ffd54f", "color_picker": True}),
|
||||
"stroke_width": ("INT", {"default": 3, "min": 1, "max": 64, "step": 1}),
|
||||
@@ -21,13 +29,13 @@ class Markup:
|
||||
}
|
||||
}
|
||||
|
||||
RETURN_TYPES = ("DATA_FIELD",)
|
||||
RETURN_NAMES = ("annotated",)
|
||||
RETURN_TYPES = ("ANNOTATION_SOURCE",)
|
||||
RETURN_NAMES = ("Output",)
|
||||
FUNCTION = "process"
|
||||
|
||||
DESCRIPTION = (
|
||||
"Draw simple vector markup over a DATA_FIELD without flattening the underlying data. "
|
||||
"Choose a shape mode, colour, and stroke width, then drag directly on the preview to place lines, rectangles, circles, or arrows."
|
||||
"Draw simple vector markup over a DATA_FIELD without flattening the underlying data, "
|
||||
"or rasterize markup directly onto an IMAGE."
|
||||
)
|
||||
|
||||
_broadcast_overlay_fn = None
|
||||
@@ -35,22 +43,32 @@ class Markup:
|
||||
|
||||
def process(
|
||||
self,
|
||||
field: DataField,
|
||||
input,
|
||||
shape: str,
|
||||
stroke_color: str,
|
||||
stroke_width: int,
|
||||
markup_shapes: str,
|
||||
) -> tuple:
|
||||
shapes = _parse_markup_shapes(markup_shapes)
|
||||
out = field.replace(
|
||||
overlays=[
|
||||
*field.overlays,
|
||||
{
|
||||
"kind": "markup",
|
||||
"shapes": shapes,
|
||||
},
|
||||
],
|
||||
)
|
||||
markup_spec = {
|
||||
"kind": "markup",
|
||||
"shapes": shapes,
|
||||
}
|
||||
|
||||
if isinstance(input, DataField):
|
||||
out = input.replace(
|
||||
overlays=[
|
||||
*input.overlays,
|
||||
markup_spec,
|
||||
],
|
||||
)
|
||||
preview_base = render_datafield_preview(input, input.colormap)
|
||||
else:
|
||||
preview_base = image_to_uint8(input)
|
||||
out = ImageData(
|
||||
_apply_markup_overlay(preview_base, None, markup_spec),
|
||||
metadata=image_metadata(input),
|
||||
)
|
||||
|
||||
if Markup._broadcast_overlay_fn is not None:
|
||||
Markup._broadcast_overlay_fn(
|
||||
@@ -58,7 +76,7 @@ class Markup:
|
||||
{
|
||||
"kind": "markup",
|
||||
"section_title": "Markup",
|
||||
"image": encode_preview(datafield_to_uint8(field, field.colormap)),
|
||||
"image": encode_preview(preview_base),
|
||||
"shape": str(shape),
|
||||
"stroke_color": _normalize_markup_color(stroke_color),
|
||||
"stroke_width": max(1, int(stroke_width)),
|
||||
|
||||
260
backend/nodes/save.py
Normal file
260
backend/nodes/save.py
Normal file
@@ -0,0 +1,260 @@
|
||||
from __future__ import annotations
|
||||
|
||||
import csv
|
||||
import json
|
||||
from pathlib import Path
|
||||
|
||||
import numpy as np
|
||||
|
||||
from backend.node_registry import register_node
|
||||
from backend.data_types import DataField, LineData, MeshModel, datafield_to_uint8, image_to_uint8
|
||||
|
||||
|
||||
@register_node(display_name="Save")
|
||||
class Save:
|
||||
@classmethod
|
||||
def INPUT_TYPES(cls):
|
||||
return {
|
||||
"required": {
|
||||
"filename": ("STRING", {
|
||||
"default": "",
|
||||
"placeholder": "filename",
|
||||
"placement": "top",
|
||||
}),
|
||||
"directory_path": ("FOLDER_PICKER", {
|
||||
"default": "",
|
||||
"label": "directory",
|
||||
"placement": "top",
|
||||
"hide_when_input_connected": "directory",
|
||||
"top_socket_input": "directory",
|
||||
}),
|
||||
"value": ("SAVE_VALUE", {"label": "value"}),
|
||||
"format": ("STRING", {
|
||||
"default": "TIFF",
|
||||
"choices_by_source_type": {
|
||||
"DATA_FIELD": ["TIFF", "PNG", "NPZ"],
|
||||
"IMAGE": ["PNG", "TIFF", "NPZ"],
|
||||
"LINE": ["CSV", "NPZ", "JSON"],
|
||||
"MEASURE_TABLE": ["CSV", "JSON"],
|
||||
"RECORD_TABLE": ["CSV", "JSON"],
|
||||
"FLOAT": ["TXT", "JSON"],
|
||||
"MESH_MODEL": ["OBJ", "STL"],
|
||||
},
|
||||
"source_type_input": "value",
|
||||
}),
|
||||
},
|
||||
"optional": {
|
||||
"directory": ("DIRECTORY", {"label": "directory"}),
|
||||
},
|
||||
}
|
||||
|
||||
RETURN_TYPES = ()
|
||||
FUNCTION = "save"
|
||||
|
||||
OUTPUT_NODE = True
|
||||
MANUAL_TRIGGER = True
|
||||
DESCRIPTION = (
|
||||
"Save a single graph value to disk. Supports fields, images, lines, tables, scalars, and 3D meshes."
|
||||
)
|
||||
|
||||
_broadcast_warning_fn = None
|
||||
_current_node_id = None
|
||||
|
||||
def save(
|
||||
self,
|
||||
filename: str,
|
||||
directory_path: str,
|
||||
format: str,
|
||||
value,
|
||||
directory: str | None = None,
|
||||
):
|
||||
path = self._resolve_save_path(filename, format, directory, directory_path)
|
||||
|
||||
if isinstance(value, MeshModel):
|
||||
self._save_mesh(path, value, format)
|
||||
elif isinstance(value, DataField):
|
||||
self._save_datafield(path, value, format)
|
||||
elif isinstance(value, np.ndarray):
|
||||
if value.ndim == 1:
|
||||
self._save_line(path, LineData(data=value), format)
|
||||
else:
|
||||
self._save_image_or_array(path, value, format)
|
||||
elif isinstance(value, LineData):
|
||||
self._save_line(path, value, format)
|
||||
elif isinstance(value, list):
|
||||
self._save_table(path, value, format)
|
||||
elif isinstance(value, (int, float, np.floating, np.integer)):
|
||||
self._save_scalar(path, float(value), format)
|
||||
else:
|
||||
raise ValueError(f"Save does not support input type: {type(value).__name__}")
|
||||
|
||||
self._send_warning(f"Saved to {path.name}")
|
||||
return ()
|
||||
|
||||
def _resolve_save_path(
|
||||
self,
|
||||
filename: str,
|
||||
format_name: str,
|
||||
directory: str | None,
|
||||
directory_path: str = "",
|
||||
) -> Path:
|
||||
ext_map = {
|
||||
"PNG": ".png",
|
||||
"TIFF": ".tiff",
|
||||
"NPZ": ".npz",
|
||||
"CSV": ".csv",
|
||||
"JSON": ".json",
|
||||
"OBJ": ".obj",
|
||||
"STL": ".stl",
|
||||
"TXT": ".txt",
|
||||
}
|
||||
ext = ext_map[format_name]
|
||||
|
||||
raw_filename = str(filename).strip() if filename is not None else ""
|
||||
raw_directory = str(directory).strip() if directory is not None else ""
|
||||
if not raw_directory:
|
||||
raw_directory = str(directory_path).strip() if directory_path is not None else ""
|
||||
|
||||
if not raw_filename:
|
||||
raise ValueError("No output filename selected — enter a file name.")
|
||||
|
||||
if raw_directory:
|
||||
dir_path = Path(raw_directory).expanduser()
|
||||
if dir_path.exists() and not dir_path.is_dir():
|
||||
raise ValueError("Directory input expects a folder path, not a file path.")
|
||||
if not dir_path.exists():
|
||||
if dir_path.suffix:
|
||||
raise ValueError("Directory input expects a folder path, not a file path.")
|
||||
dir_path.mkdir(parents=True, exist_ok=True)
|
||||
path = dir_path / Path(raw_filename).name
|
||||
else:
|
||||
path = Path(raw_filename).expanduser()
|
||||
path.parent.mkdir(parents=True, exist_ok=True)
|
||||
|
||||
if path.suffix.lower() != ext:
|
||||
path = path.with_suffix(ext)
|
||||
return path
|
||||
|
||||
def _save_datafield(self, path: Path, field: DataField, format_name: str):
|
||||
if format_name == "TIFF":
|
||||
import tifffile
|
||||
tifffile.imwrite(str(path), np.asarray(field.data, dtype=np.float32))
|
||||
return
|
||||
if format_name == "NPZ":
|
||||
np.savez(str(path), field=np.asarray(field.data))
|
||||
return
|
||||
if format_name == "PNG":
|
||||
from PIL import Image
|
||||
Image.fromarray(datafield_to_uint8(field, field.colormap)).save(str(path))
|
||||
return
|
||||
raise ValueError(f"Format {format_name} is not supported for DATA_FIELD.")
|
||||
|
||||
def _save_image_or_array(self, path: Path, image: np.ndarray, format_name: str):
|
||||
arr = np.asarray(image)
|
||||
if format_name == "PNG":
|
||||
from PIL import Image
|
||||
Image.fromarray(image_to_uint8(arr)).save(str(path))
|
||||
return
|
||||
if format_name == "TIFF":
|
||||
import tifffile
|
||||
tifffile.imwrite(str(path), image_to_uint8(arr))
|
||||
return
|
||||
if format_name == "NPZ":
|
||||
np.savez(str(path), image=arr)
|
||||
return
|
||||
raise ValueError(f"Format {format_name} is not supported for IMAGE.")
|
||||
|
||||
def _save_line(self, path: Path, line: LineData, format_name: str):
|
||||
y = np.asarray(line.data, dtype=np.float64).ravel()
|
||||
x = np.asarray(line.x_axis, dtype=np.float64).ravel()[: len(y)] if line.x_axis is not None else np.arange(len(y), dtype=np.float64)
|
||||
if format_name == "CSV":
|
||||
with path.open("w", newline="", encoding="utf-8") as fh:
|
||||
writer = csv.writer(fh)
|
||||
writer.writerow(["x", "y", "x_unit", "y_unit"])
|
||||
for xv, yv in zip(x, y):
|
||||
writer.writerow([xv, yv, line.x_unit, line.y_unit])
|
||||
return
|
||||
if format_name == "NPZ":
|
||||
np.savez(str(path), x=x, y=y)
|
||||
return
|
||||
if format_name == "JSON":
|
||||
path.write_text(json.dumps({
|
||||
"x": x.tolist(),
|
||||
"y": y.tolist(),
|
||||
"x_unit": line.x_unit,
|
||||
"y_unit": line.y_unit,
|
||||
}, indent=2), encoding="utf-8")
|
||||
return
|
||||
raise ValueError(f"Format {format_name} is not supported for LINE.")
|
||||
|
||||
def _save_table(self, path: Path, rows: list, format_name: str):
|
||||
if format_name == "JSON":
|
||||
path.write_text(json.dumps(rows, indent=2), encoding="utf-8")
|
||||
return
|
||||
if format_name == "CSV":
|
||||
columns: list[str] = []
|
||||
for row in rows:
|
||||
if isinstance(row, dict):
|
||||
for key in row.keys():
|
||||
if key not in columns:
|
||||
columns.append(str(key))
|
||||
with path.open("w", newline="", encoding="utf-8") as fh:
|
||||
writer = csv.DictWriter(fh, fieldnames=columns)
|
||||
writer.writeheader()
|
||||
for row in rows:
|
||||
writer.writerow(row if isinstance(row, dict) else {"value": row})
|
||||
return
|
||||
raise ValueError(f"Format {format_name} is not supported for table inputs.")
|
||||
|
||||
def _save_scalar(self, path: Path, value: float, format_name: str):
|
||||
if format_name == "TXT":
|
||||
path.write_text(f"{value}\n", encoding="utf-8")
|
||||
return
|
||||
if format_name == "JSON":
|
||||
path.write_text(json.dumps({"value": value}, indent=2), encoding="utf-8")
|
||||
return
|
||||
raise ValueError(f"Format {format_name} is not supported for scalar values.")
|
||||
|
||||
def _save_mesh(self, path: Path, mesh: MeshModel, format_name: str):
|
||||
if format_name == "OBJ":
|
||||
self._save_obj(path, mesh)
|
||||
return
|
||||
if format_name == "STL":
|
||||
self._save_stl(path, mesh)
|
||||
return
|
||||
raise ValueError(f"Format {format_name} is not supported for MESH_MODEL.")
|
||||
|
||||
def _save_obj(self, path: Path, mesh: MeshModel):
|
||||
lines = []
|
||||
for vertex in mesh.vertices:
|
||||
lines.append(f"v {vertex[0]} {vertex[1]} {vertex[2]}")
|
||||
for face in mesh.faces:
|
||||
lines.append(f"f {int(face[0]) + 1} {int(face[1]) + 1} {int(face[2]) + 1}")
|
||||
path.write_text("\n".join(lines) + "\n", encoding="utf-8")
|
||||
|
||||
def _save_stl(self, path: Path, mesh: MeshModel):
|
||||
def normal(a, b, c):
|
||||
n = np.cross(b - a, c - a)
|
||||
length = float(np.linalg.norm(n))
|
||||
return n / length if length > 0 else np.array([0.0, 1.0, 0.0], dtype=np.float32)
|
||||
|
||||
lines = ["solid argonode"]
|
||||
vertices = np.asarray(mesh.vertices, dtype=np.float32)
|
||||
for face in np.asarray(mesh.faces, dtype=np.int32):
|
||||
a, b, c = vertices[int(face[0])], vertices[int(face[1])], vertices[int(face[2])]
|
||||
n = normal(a, b, c)
|
||||
lines.append(f" facet normal {n[0]} {n[1]} {n[2]}")
|
||||
lines.append(" outer loop")
|
||||
lines.append(f" vertex {a[0]} {a[1]} {a[2]}")
|
||||
lines.append(f" vertex {b[0]} {b[1]} {b[2]}")
|
||||
lines.append(f" vertex {c[0]} {c[1]} {c[2]}")
|
||||
lines.append(" endloop")
|
||||
lines.append(" endfacet")
|
||||
lines.append("endsolid argonode")
|
||||
path.write_text("\n".join(lines) + "\n", encoding="utf-8")
|
||||
|
||||
def _send_warning(self, message: str):
|
||||
fn = Save._broadcast_warning_fn
|
||||
nid = Save._current_node_id
|
||||
if fn and nid:
|
||||
fn(nid, message)
|
||||
@@ -49,11 +49,11 @@ class SaveImage:
|
||||
OUTPUT_NODE = True
|
||||
MANUAL_TRIGGER = True
|
||||
DESCRIPTION = (
|
||||
"Save one or more layers to a single file. "
|
||||
"Save one or more image/field layers to a single file. "
|
||||
"Each layer input accepts either a DATA_FIELD or an IMAGE, including annotated images. "
|
||||
"Optionally drive the output directory from a folder/path node, while keeping the filename widget for the file name. "
|
||||
"A new slot appears as each one is filled, with a matching per-layer name field. "
|
||||
"TIFF writes multi-page data and stores layer names as page descriptions; "
|
||||
"Use this for composing multi-channel stacks. TIFF writes multi-page data and stores layer names as page descriptions; "
|
||||
"NPZ writes named arrays using those layer names as keys. "
|
||||
"Click Save to write (does not auto-run)."
|
||||
)
|
||||
|
||||
@@ -1,37 +1,119 @@
|
||||
from __future__ import annotations
|
||||
import base64
|
||||
import io
|
||||
import numpy as np
|
||||
from backend.node_registry import register_node
|
||||
from backend.data_types import (
|
||||
COLORMAPS,
|
||||
DataField,
|
||||
ImageData,
|
||||
MeshModel,
|
||||
_annotation_context_from_field,
|
||||
colormap_to_uint8,
|
||||
normalize_for_colormap,
|
||||
resolve_colormap_input,
|
||||
)
|
||||
|
||||
|
||||
def _darken_colors(colors: np.ndarray, factor: float) -> np.ndarray:
|
||||
return np.clip(np.rint(colors.astype(np.float32) * factor), 0, 255).astype(np.uint8)
|
||||
|
||||
|
||||
def _grid_triangle_indices(nx: int, ny: int, *, reverse: bool = False) -> list[list[int]]:
|
||||
faces: list[list[int]] = []
|
||||
for iy in range(ny - 1):
|
||||
for ix in range(nx - 1):
|
||||
a = iy * nx + ix
|
||||
b = a + 1
|
||||
c = a + nx
|
||||
d = c + 1
|
||||
if reverse:
|
||||
faces.append([a, b, c])
|
||||
faces.append([b, d, c])
|
||||
else:
|
||||
faces.append([a, c, b])
|
||||
faces.append([b, c, d])
|
||||
return faces
|
||||
|
||||
|
||||
def _build_mesh_model(z: np.ndarray, colors_u8: np.ndarray, z_scale: float, make_solid: bool) -> MeshModel:
|
||||
ny, nx = z.shape
|
||||
zmin = float(z.min())
|
||||
zmax = float(z.max())
|
||||
z_range = zmax - zmin if zmax != zmin else 1.0
|
||||
|
||||
top_vertices = np.empty((nx * ny, 3), dtype=np.float32)
|
||||
top_colors = colors_u8.reshape(-1, 3).astype(np.uint8)
|
||||
for iy in range(ny):
|
||||
py = iy / max(ny - 1, 1) - 0.5
|
||||
for ix in range(nx):
|
||||
idx = iy * nx + ix
|
||||
px = ix / max(nx - 1, 1) - 0.5
|
||||
pz = ((float(z[iy, ix]) - zmin) / z_range - 0.5) * z_scale
|
||||
top_vertices[idx] = (px, pz, py)
|
||||
|
||||
faces = _grid_triangle_indices(nx, ny)
|
||||
if not make_solid:
|
||||
return MeshModel(vertices=top_vertices, faces=np.asarray(faces, dtype=np.int32), colors=top_colors)
|
||||
|
||||
base_y = float(top_vertices[:, 1].min())
|
||||
bottom_vertices = top_vertices.copy()
|
||||
bottom_vertices[:, 1] = base_y
|
||||
bottom_colors = _darken_colors(top_colors, 0.35)
|
||||
|
||||
vertices = np.vstack([top_vertices, bottom_vertices]).astype(np.float32)
|
||||
colors = np.vstack([top_colors, bottom_colors]).astype(np.uint8)
|
||||
|
||||
bottom_offset = len(top_vertices)
|
||||
faces.extend([[a + bottom_offset, b + bottom_offset, c + bottom_offset] for a, b, c in _grid_triangle_indices(nx, ny, reverse=True)])
|
||||
|
||||
def _add_wall(a: int, b: int):
|
||||
faces.append([a, a + bottom_offset, b])
|
||||
faces.append([b, a + bottom_offset, b + bottom_offset])
|
||||
|
||||
for ix in range(nx - 1):
|
||||
_add_wall(ix, ix + 1)
|
||||
top_row = (ny - 1) * nx
|
||||
_add_wall(top_row + ix + 1, top_row + ix)
|
||||
for iy in range(ny - 1):
|
||||
_add_wall((iy + 1) * nx, iy * nx)
|
||||
_add_wall(iy * nx + (nx - 1), (iy + 1) * nx + (nx - 1))
|
||||
|
||||
return MeshModel(vertices=vertices, faces=np.asarray(faces, dtype=np.int32), colors=colors)
|
||||
|
||||
|
||||
@register_node(display_name="3D View")
|
||||
class View3D:
|
||||
_CUSTOM_PREVIEW = True
|
||||
|
||||
@classmethod
|
||||
def INPUT_TYPES(cls):
|
||||
return {
|
||||
"required": {
|
||||
"field": ("DATA_FIELD",),
|
||||
"field": ("DATA_FIELD", {"label": "mesh"}),
|
||||
"colormap": (["auto"] + list(COLORMAPS), {"hide_when_input_connected": "colormap_map"}),
|
||||
"z_scale": ("FLOAT", {"default": 1, "min": 0.1, "max": 10.0, "step": 0.05}),
|
||||
"resolution": ("INT", {"default": 128, "min": 32, "max": 512, "step": 16}),
|
||||
"make_solid": ("BOOLEAN", {"default": False}),
|
||||
"camera_azimuth": ("FLOAT", {"default": 0.0, "hidden": True}),
|
||||
"camera_polar": ("FLOAT", {"default": 1.1, "hidden": True}),
|
||||
"camera_distance": ("FLOAT", {"default": 1.8, "hidden": True}),
|
||||
"viewport_snapshot": ("STRING", {"default": "", "hidden": True}),
|
||||
},
|
||||
"optional": {
|
||||
"map_field": ("DATA_FIELD", {"label": "map"}),
|
||||
"colormap_map": ("COLORMAP", {"label": "colormap"}),
|
||||
},
|
||||
}
|
||||
|
||||
RETURN_TYPES = ()
|
||||
RETURN_TYPES = ("MESH_MODEL", "IMAGE")
|
||||
RETURN_NAMES = ("mesh", "viewport")
|
||||
FUNCTION = "render"
|
||||
|
||||
OUTPUT_NODE = True
|
||||
DESCRIPTION = (
|
||||
"Interactive 3D surface view of a DATA_FIELD. "
|
||||
"Use the mesh input for geometry and optionally a second map input for coloring. "
|
||||
"Drag to rotate, scroll to zoom. z_scale exaggerates height."
|
||||
)
|
||||
|
||||
@@ -40,9 +122,12 @@ class View3D:
|
||||
|
||||
def render(
|
||||
self, field: DataField,
|
||||
colormap: str, z_scale: float, resolution: int, colormap_map=None,
|
||||
colormap: str, z_scale: float, resolution: int, make_solid: bool = False,
|
||||
camera_azimuth: float = 0.0, camera_polar: float = 1.1, camera_distance: float = 1.8,
|
||||
viewport_snapshot: str = "",
|
||||
map_field: DataField | None = None, colormap_map=None,
|
||||
) -> tuple:
|
||||
import base64
|
||||
from scipy.ndimage import map_coordinates
|
||||
|
||||
data = field.data
|
||||
yres, xres = data.shape
|
||||
@@ -53,33 +138,75 @@ class View3D:
|
||||
ny, nx = z.shape
|
||||
|
||||
zmin, zmax = float(z.min()), float(z.max())
|
||||
color_field = map_field if map_field is not None else field
|
||||
color_data = color_field.data
|
||||
|
||||
if color_field is field and color_data.shape == z.shape:
|
||||
color_samples = z
|
||||
elif color_field is field:
|
||||
color_samples = color_data[::step_y, ::step_x].astype(np.float32)
|
||||
else:
|
||||
x_phys = np.linspace(field.xoff, field.xoff + field.xreal, nx, dtype=np.float64)
|
||||
y_phys = np.linspace(field.yoff, field.yoff + field.yreal, ny, dtype=np.float64)
|
||||
grid_y, grid_x = np.meshgrid(y_phys, x_phys, indexing="ij")
|
||||
|
||||
map_x = np.clip(
|
||||
(grid_x - color_field.xoff) / max(color_field.xreal, 1e-12) * max(color_field.xres - 1, 0),
|
||||
0.0,
|
||||
max(color_field.xres - 1, 0),
|
||||
)
|
||||
map_y = np.clip(
|
||||
(grid_y - color_field.yoff) / max(color_field.yreal, 1e-12) * max(color_field.yres - 1, 0),
|
||||
0.0,
|
||||
max(color_field.yres - 1, 0),
|
||||
)
|
||||
color_samples = map_coordinates(
|
||||
color_data.astype(np.float64),
|
||||
[map_y, map_x],
|
||||
order=1,
|
||||
mode="nearest",
|
||||
).astype(np.float32)
|
||||
|
||||
z_norm = normalize_for_colormap(
|
||||
z,
|
||||
offset=field.display_offset,
|
||||
scale=field.display_scale,
|
||||
data_min=float(field.data.min()),
|
||||
data_max=float(field.data.max()),
|
||||
color_samples,
|
||||
offset=color_field.display_offset,
|
||||
scale=color_field.display_scale,
|
||||
data_min=float(color_field.data.min()),
|
||||
data_max=float(color_field.data.max()),
|
||||
)
|
||||
|
||||
resolved_colormap = resolve_colormap_input(
|
||||
colormap,
|
||||
colormap_input=colormap_map,
|
||||
inherited=field.colormap,
|
||||
inherited=color_field.colormap,
|
||||
default="gray",
|
||||
)
|
||||
colors_u8 = colormap_to_uint8(z_norm, resolved_colormap)
|
||||
mesh_model = _build_mesh_model(z, colors_u8, float(z_scale * 0.1), bool(make_solid))
|
||||
|
||||
z_b64 = base64.b64encode(z.tobytes()).decode()
|
||||
colors_b64 = base64.b64encode(colors_u8.tobytes()).decode()
|
||||
positions_b64 = base64.b64encode(np.asarray(mesh_model.vertices, dtype=np.float32).tobytes()).decode()
|
||||
indices_b64 = base64.b64encode(np.asarray(mesh_model.faces, dtype=np.uint32).tobytes()).decode()
|
||||
mesh_colors_b64 = None
|
||||
if mesh_model.colors is not None:
|
||||
mesh_colors_b64 = base64.b64encode(np.asarray(mesh_model.colors, dtype=np.uint8).tobytes()).decode()
|
||||
|
||||
mesh_data = {
|
||||
"width": nx,
|
||||
"height": ny,
|
||||
"z_data": z_b64,
|
||||
"colors": colors_b64,
|
||||
"positions": positions_b64,
|
||||
"indices": indices_b64,
|
||||
"vertex_colors": mesh_colors_b64,
|
||||
"z_min": zmin,
|
||||
"z_max": zmax,
|
||||
"z_scale": float(z_scale * 0.1),
|
||||
"make_solid": bool(make_solid),
|
||||
"camera_azimuth": float(camera_azimuth),
|
||||
"camera_polar": float(camera_polar),
|
||||
"camera_distance": float(camera_distance),
|
||||
"x_range": [float(field.xoff), float(field.xoff + field.xreal)],
|
||||
"y_range": [float(field.yoff), float(field.yoff + field.yreal)],
|
||||
}
|
||||
@@ -87,4 +214,32 @@ class View3D:
|
||||
if View3D._broadcast_mesh_fn is not None:
|
||||
View3D._broadcast_mesh_fn(View3D._current_node_id, mesh_data)
|
||||
|
||||
return ()
|
||||
annotation_context = _annotation_context_from_field(color_field, resolved_colormap)
|
||||
annotation_context["xreal"] = float(field.xreal)
|
||||
annotation_context["si_unit_xy"] = str(field.si_unit_xy)
|
||||
viewport_image = ImageData(
|
||||
self._decode_viewport_snapshot(viewport_snapshot),
|
||||
metadata={
|
||||
"annotation_context": annotation_context,
|
||||
"viewport_camera": {
|
||||
"azimuth": float(camera_azimuth),
|
||||
"polar": float(camera_polar),
|
||||
"distance": float(camera_distance),
|
||||
},
|
||||
},
|
||||
)
|
||||
return (mesh_model, viewport_image)
|
||||
|
||||
def _decode_viewport_snapshot(self, snapshot: str) -> np.ndarray:
|
||||
text = str(snapshot or "").strip()
|
||||
if not text.startswith("data:image/"):
|
||||
return np.zeros((1, 1, 3), dtype=np.uint8)
|
||||
|
||||
try:
|
||||
header, payload = text.split(",", 1)
|
||||
raw = base64.b64decode(payload)
|
||||
from PIL import Image
|
||||
image = Image.open(io.BytesIO(raw)).convert("RGB")
|
||||
return np.asarray(image, dtype=np.uint8)
|
||||
except Exception:
|
||||
return np.zeros((1, 1, 3), dtype=np.uint8)
|
||||
|
||||
Reference in New Issue
Block a user